Flores Valle, A., Gonçalves, P.J., and Seelig, J.D. (2021). Integration of sleep homeostasis and navigation in Drosophila. PLoS Comput Biol 17, e1009088. 
Vishniakou, I., and Seelig, J.D. (2021). Differentiable model-based adaptive optics for two-photon microscopy. Opt Express 29, 21418-21427.
Flores Valle, A., Honnef, R., and Seelig, J.D. (2021). Automated long-term two-photon imaging in head-fixed walking Drosophila. bioaRxiv, 436241.
Vishniakou, I., and Seelig, J.D. (2020). Differentiable model-based adaptive optics with transmitted and reflected light. Opt Express 28, 26436-26446.
Vishniakou, I., and Seelig, J.D. (2020). Wavefront correction for adaptive optics with reflected light and deep neural networks. Opt Express 8, 15459-15471.
Vishniakou, I., Plöger, P.G., and Seelig, J.D. (2019). Virtual reality for animal navigation with camera-based optical flow tracking. J Neurosci methods 327, 108403.
Flores Valle, A., and Seelig, J.D. (2019). Two-photon Bessel beam tomography for fast volume imaging. Opt Express 27, 12147-12162.
Turpin, A., Vishniakou, I., and Seelig, J.D. (2018). Light scattering control in transmission and reflection with neural networks. Opt Express 26, 30911-30929.
Turner-Evans, D., Wegener, S., Rouault, H., Franconville, R., Wolff, T., Seelig, J.D., Druckmann, S., and Jayaraman, V. (2017). Angular velocity integration in a fly heading circuit. eLife 6, e23496.
Lu, R., Sun, W., Liang, Y., Kerlin, A., Bierfeld, J., Seelig, J.D., Wilson, D.E., Scholl, B., Mohar, B., Tanimoto, M., Koyama, M., Fitzpatrick, D., Orger, M.B., and Ji, N. (2017). Video-rate volumetric functional imaging of the brain at synaptic resolution. Nat Neurosci 20, 620-628.
Seelig, J.D., and Jayaraman, V. (2015). Neural dynamics for landmark orientation and angular path integration. Nature 521, 186-191.
Seelig, J.D., and Jayaraman, V. (2013). Feature detection and orientation tuning in the Drosophila central complex. Nature 503, 262-266.
Seelig, J.D., and Jayaraman, V. (2012). Studying sensorimotor processing with physiology in behaving Drosophila. Int Rev Neurobiol 99, 169-189.
Chiappe, M.E., Seelig, J.D., Reiser, M.B., and Jayaraman, V. (2010). Walking modulates speed sensitivity in Drosophila motion vision. Curr Biol 20, 1470-1475.
Seelig, J.D., Chiappe, M.E., Lott, G.K., Dutta, A., Osborne, J.E., Reiser, M.B., and Jayaraman, V. (2010). Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior. Nature Methods 7, 535-540.
Seelig, J.D., Leslie, K., Renn, A., Kuhn, S., Jacobsen, V., Corput van de, M., Wyman, C., and Sandoghdar, V. (2007). Nanoparticle-induced fluorescence lifetime modification as nanoscopic ruler: demonstration at the single molecule level. Nano Lett 7, 685-689.
Renn, A., Seelig, J. D., and Sandoghdar, V. (2006). Oxygen-dependent photochemistry of fluorescent dyes studied at the single molecule level. Mol Phys 104, 409-414.
Arntz, Y., Seelig, J. D., Lang, H.P., Zhang, J., Hunziker, P., Ramseyer, J.P., Meyer, E., Hegner, M., and Gerber, C. (2002). Label-free protein assay based on a nanomechanical cantilever array. Nanotech 14, 86-90.