Vishniakou, I., Plöger, P.G. and Seelig, J.D., 2019. Virtual reality for animal navigation with camera-based optical flow tracking. J. Neurosci. methods, 108403. 
Valle, A.F. and Seelig, J.D., 2019. Two-photon Bessel beam tomography for fast volume imaging. Optics express, 27(9), pp.12147-12162.
Turpin, A., Vishniakou, I. and Seelig, J.D., 2018. Light scattering control in transmission and reflection with neural networks. Optics express, 26(23), pp.30911-30929.
Turner-Evans, D., Wegener, S., Rouault, H., Franconville, R., Wolff, T., Seelig, J.D., Druckmann, S. & Jayaraman, V. (2017) “Angular velocity integration in a fly heading circuit” eLife 6, e23496 
Lu, R., Sun, W., Liang, Y., Kerlin, A., Bierfeld, J., Seelig, J.D., Wilson, D.E., Scholl, B., Mohar, B., Tanimoto, M., Koyama, M., Fitzpatrick, D., Orger, M.B. & Ji, N. (2017) “Video-rate volumetric functional imaging of the brain at synaptic resolution” Nat. Neurosci. 20, 620–628
Seelig, J.D. & Jayaraman, V. (2015) "Neural dynamics for landmark orientation and angular path integration" Nature 521, 186 - 191
Seelig, J.D. & Jayaraman, V. (2013) "Feature detection and orientation tuning in the Drosophila central complex" Nature 503, 262 - 266
Seelig, J.D. & Jayaraman, V. (2012) "Studying sensorimotor processing with physiology in behaving Drosophila" Int. Rev. Neurobiol. 99, 169 - 189
Chiappe, M.E., Seelig, J.D., Reiser, M.B. & Jayaraman, V. (2010) "Walking modulates speed sensitivity in Drosophila motion vision" Curr. Biol. 20, 1470 - 1475
Seelig, J.D., Chiappe, M.E., Lott, G.K., Dutta, A., Osborne, J.E., Reiser, M.B. & Yayaraman, V. (2010) "Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior" Nature Methods 7, 535 - 540
Seelig, J.D., Leslie, K., Renn, A., Kuhn, S., Jacobsen, V., Corput van de, M., Wyman, C. & Sandoghdar, V. (2007) "Nanoparticle-induced fluorescence lifetime modification as nanoscopic ruler: demonstration at the single molecule level" Nano Lett. 7, 685 - 689
Renn, A., Seelig, J. D. & Sandoghdar, V. (2006) "Oxygen-dependent photochemistry of fluorescent dyes studied at the single molecule level" Mol. Phys. 104, 409-414
Arntz, Y., Seelig, J. D., Lang, H.P., Zhang, J., Hunziker, P., Ramseyer, J.P., Meyer, E., Hegner, M. & Gerber, C. (2002) "Label-free protein assay based on a nanomechanical cantilever array" Nanotech. 14, 86 - 90