Publications

A) Original articles in peer reviewed journals:

1.Benezra SE, Narayanan RT, Egger R, Oberlaender M, Long MA*. (2018) Morphological characterization of HVC projection neurons in the zebra finch (Taeniopygia guttata). J Comp Neurol. 526(10):1673-1689.

2.Guest JM, Seetharama MM, Wendel ES, Strick PL, Oberlaender M*. (2018) 3D reconstruction and standardization of the rat facial nucleus for precise mapping of vibrissal motor networks. Neuroscience, 368:171-186.

3.Narayanan RT, Udvary D, Oberlaender M*. (2017) Cell Type-Specific Structural Organization of the Six Layers in Rat Barrel Cortex. Front Neuroanat., 11:91.

4.Rojas-Piloni G, Guest JM, Egger R, Johnson AS, Sakmann B, Oberlaender M*. (2017) Relationships between structure, in vivo function and long-range axonal target of cortical pyramidal tract neurons. Nat Commun., 8(1):870.

5.Kornfeld J, Benezra SE, Narayanan RT, Svara F, Egger R, Oberlaender M, Denk W, Long MA*. (2017) EM connectomics reveals axonal target variation in a sequence-generating network. Elife, 6. pii: e24364.

6.Landau ID, Egger R, Dercksen VJ, Oberlaender M, Sompolinsky H*. (2016) The Impact of Structural Heterogeneity on Excitation-Inhibition Balance in Cortical Networks. Neuron, 92(5):1106-1121.

7.Egger R, Schmitt AC, Wallace DJ, Sakmann B*, Oberlaender M*, Kerr JN. (2015) Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites. PNAS, 112(45):14072-7.

8.Narayanan RT, Egger R, Johnson AS, Mansvelder HD, Sakmann B, de Kock CP*, Oberlaender M*. (2015) Beyond Columnar Organization: Cell Type- and Target Layer-Specific Principles of Horizontal Axon Projection Patterns in Rat Vibrissal Cortex. Cereb. Cortex, 25(11):4450-68.

9.Egger R, Dercksen VJ, Udvary D, Hege HC, Oberlaender M*. (2014) Generation of dense statistical connectomes from sparse morphological data. Front. Neuroanat., 8:129.

10.Dercksen VJ, Hege HC, Oberlaender M*. (2014) The Filament Editor: An Interactive Software Environment for Visualization, Proof-Editing and Analysis of 3D Neuron Morphology. Neuroinformatics, 12(2): 325-39.

11.Haberl M, da Silva SV, Guest JM, Ginger K, Ghanem A, Mulle C, Oberlaender M, Conzelmann K, Frick A*. (2014) An anterograde rabies virus vector for high-resolution large-scale reconstruction of 3D neuron morphology. Brain Struct Funct., 220, 1369 – 1379.

12.Meyer HS, Egger R, Guest JM, Foerster R, Reissl S, Oberlaender M*. (2013) Cellular organization of cortical barrel columns is whisker-specific. PNAS, 110(47):19113-8.

13.Egger R, Narayanan RT, Helmstaedter M, de Kock CPJ, Oberlaender M*. (2012) 3D reconstruction and standardization of rat vibrissal cortex for precise registration of single neuron morphology. PLoS Comput Biol., 8(12): e1002837.

14.Oberlaender M, Ramirez A, Bruno RM*. (2012) Sensory experience restructures thalamocortical axons during adulthood. Neuron, 74(4):648-55.

15.Oberlaender M*, de Kock CP, Bruno RM, Ramirez A, Meyer HS, Dercksen VJ, Helmstaedter M, Sakmann B. (2012) Cell type-specific three-dimensional structure of thalamocortical circuits in a column of rat vibrissal cortex. Cereb. Cortex, 22(10):2375-91.

16.Oberlaender M*, Boudewijns ZS, Kleele T, Mansvelder HD, Sakmann B, de Kock CP. (2011) Three-dimensional axon morphologies of individual layer 5 neurons indicate cell type-specific intracortical pathways for whisker motion and touch. PNAS, 108(10):4188-93.

17.Lang S, Dercksen VJ, Sakmann B, Oberlaender M*. (2011) Simulation of signal flow in 3D reconstructions of anatomically realistic neural networks. Neural Networks, 24(9).

18.Kleinfeld D*, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HSM, Micheva KD, Oberlaender M, Prohaska S, Reid RC, Smith SJ, Takemura S, Tsai PS, Sakmann B. (2011) Large-scale automated histology in the pursuit of connectomes. J Neurosci., 31(45):16125-38.

19.Meyer HSM, Wimmer VC, Oberlaender M, de Kock CPJ, Sakmann B, Helmstaedter M*. (2010) Number and laminar distribution of neurons in a thalamocortical projection column of rat vibrissal cortex. Cereb Cortex, 20(10):2277-86.

20.Oberlaender M*, Dercksen VJ, Egger R, Gensel M, Sakmann B, Hege HC. (2009) Automated 3D detection and counting of neuron somata. J Neurosci Methods, 180(1).

21.Oberlaender M*, Broser PJ, Sakmann B, Hippler S. (2009) Shack-Hartmann wave front measurements in cortical tissue for deconvolution of large 3D mosaic transmitted light brightfield micrographs. J Microsc., 233(2): 275-89.

22.Oberlaender M*, Bruno RM, Sakmann B, Broser PJ. (2007) Transmitted light brightfield mosaic microscopy for three-dimensional tracing of single neuron morphology. J. Biomed. Opt., 12(6):064029.


B) Conference articles, comments and contribution to textbooks:

23.Leopold DA, Strick PL, Bassett DS, Bruno RM, Cuntz H, Harris KM, Oberlaender M, Raichle ME. (in press) Functional Architecture of the Cerebral Cortex. In book: Cerebral Cortex 3.0: Complexity and Computation

24.Oberlaender M*. (in press) Neuronal Morphology and Its Significance. In book: Cerebral Cortex 3.0: Complexity and Computation

25.Barth A, Burkhalter A, Callaway EM, Connors BW, Cauli B, DeFelipe J, Feldmeyer D, Freund T, Kawaguchi Y, Kisvarday Z, Kubota Y, McBain C, Oberlaender M, Rossier J, Rudy B, Staiger JF, Somogyi P, Tamas G, Yuste R. (2016) Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex". Science, 353(6304):1108.

26.Narayanan RT, Egger R, de Kock CPJ, Oberlaender M*. (2016) Neuronal Cell Types in the Neocortex. In book: Axons and Brain Architecture, (Ed) K. S. Rockland, Elsevier, San Diego, USA

27.Egger R, Oberlaender M*. (2015) Cell Types in the Cerebral Cortex: An Overview from the Rat Vibrissal Cortex. In book: Brain Mapping: An Encyclopedic Reference, (Ed) A. W. Toga, Academic Press, Amsterdam, The Netherlands.

28.Egger R, Dercksen V J, de Kock C P J, Oberlaender M*. (2014) Reverse Engineering the 3D Structure and Sensory-Evoked Signal Flow of Rat Vibrissal Cortex. In book: The Computing Dendrite: From Structure to Function, Springer Series in Computational Neuroscience Vol. 11.

29.Dercksen VJ, Egger R, Hege HC, Oberlaender M*. (2012) Synaptic Connectivity in Anatomically Realistic Neural Networks: Modeling and Visual Analysis. Eurographics Workshop on Visual Computing for Biology and Medicine.

30.Dercksen VJ, Oberlaender M, Sakmann B, Hege HC*. (2012) Interactive Visualization as a Key Prerequisite for Reconstruction of Anatomically Realistic Neural Networks. In book: Visualization in Medical and Life Sciences II: 27-44.

31.Boudewijns ZSRM, Kleele T, Mansvelder HD, Sakmann B, de Kock CPJ, Oberlaender M*. (2011) Semi-automated three-dimensional reconstructions of individual neurons reveal cell type-specific circuits in cortex. Commun Integr Biol., 4(4): 486-8.

Dercksen VJ, Weber B, Guenther D, Oberlaender M, Prohaska S, Hege HC*. (2009) Automatic Alignment of Stacks of Filament Data. IEEE Biomedical Imaging: From Nano to Macro.