Publications

2020

Koseska, A., and Bastiaens, P.I.H. (2020). Processing Temporal Growth Factor Patterns by an Epidermal Growth Factor Receptor Network Dynamically Established in Space. Annu Rev Cell Dev Biol 36, 359-383. Link to MPG pubication repository

Stanoev, A., Nandan, A.P., Koseska, A. (2020). Organization at criticality enables processing of time-varying signals by receptor networks. Mol Syst Biol 16, e8870. Link to MPG publication repository

Stankevich, N., Koseska, A. (2020). Cooperative maintenance of cellular identity in systems with intercellular communication defects. Chaos 30, 013144. Link to MPG publication repository PuRe

2019

Gavriljuk K., Ghasemalizadeh F.,Scocozza B., Nandan AP, Seidel H, Schmick M, Koseska A, Bastiaens PIH (2019). A synthetic morphogenic perceptory cell. BioRxiv, 481887v1.

Stanoev A, Schröter C, Koseska A (2019). Robustness and timing of cellular differentiation through population-based symmetry breaking. BioRxiv, 578898v2.

2018

Stankevich N,Mosekilde E, Koseska A (2018).Stochastic switching in systems with rare and hidden attractors. Eur Phys J Spec Top 227, 747–756.

Stanoev A, Mhamane A, Schuermann KC, Grecco HE, Stallaert W, Baumdick M, Brüggemann Y, Joshi MS, Roda-Navarro P, Fengler S, Stockert R, Roßmannek L, Luig J, Koseska A, Bastiaens PIH (2018).Interdependence between EGFR and phosphatases spatially established by vesicular dynamics generates a growth factor sensing and responding network. Cell Syst 7, 295-309.

2017

Koseska A, Bastiaens PI (2017).Cell signaling as a cognitive process.EMBO J 36, 568-582.

2015

Zou W, Senthilkumar DV, Nagao R, Kiss IZ, Tang Y, Koseska A, Duan J, Kurths J (2015).Restoration of rhythmicity in diffusively coupled dynamical networks. Nat Commun 6, 7709.

2014

Trpevski I, Stanoev A, Koseska A, Kocarev LJ (2014).Discrete-time distributed consensus algorithm on multiplex networks. New Journal of Physics 16, 113063.

2013

Koseska A, Volkov E, Kurths J (2013).Oscillation quenching mechanisms: amplitude vs. oscillation death. Physics Reports 531, 173-199.

Koseska A, Volkov E, Kurths J (2013). Transition from amplitude to oscillation death via Turing bifurcation. Phys Rev Lett 111, 024103.

Zou W, Senthilkumar DV, Koseska A, Kurths J (2013). Generalizing the transition from amplitude to oscillation death in coupled oscillators. Phys Rev E Stat Nonlin Soft Matter Phys. 88, 050901.

Zakharova A, Nikoloski Z, Koseska A (2013).Dimensionality reduction of bistable biological systems. Bull Math Biol 75, 373-392.

Zakharova A, Schneider I, Kyrychko YN, Blyuss KB, Koseska A, Fiedler B, Schöll E (2013). Time delay control of symmetry-breaking primary and secondary oscillation death. Europhys Lett 104, 50004.

Zou W, Senthilkumar DV, Koseska A, Kurths J (2013).Generalizing the transition from amplitude to oscillation death in coupled oscillators. Phys Rev E Stat Nonlin Soft Matter Phys.88, 050901.

Winck FV, Arvidsson S, Riaño-Pachón DM, Hempel S, Koseska A, Nikoloski Z, Urbina Gomez DA, Rupprecht J, Mueller-Roeber B (2013). Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation. PLoS One 8, e79909.

Hempel S, Koseska A, Nikoloski Z (2013). Data-driven reconstruction of directed networks. The European Physical Journal B 86, 250.

2012

Ullner E, Ares S, Morelli LG, Oates AS, Julicher F, Nicola E, Heussen R, Whitmore D, Blyuss K, Fryett M, Zakharova A, Koseska A, Nene NR and Zaikin A (2012). Noise and oscillations in biological systems: multidisciplinary approach between experimental biology, theoretical modelling and synthetic biology. International Journal of Modern Physics B 26, 1246009. http://dx.doi.org/10.1142/S0217979212460095


2011

Zakharova A, Kurths J, Vadivasova T, Koseska A (2011).Analysing dynamical behavior of cellular networks via stochastic bifurcations. PLoS One 6, e19696. doi: 10.1371/journal.pone.0019696.

Koseska A, Volkov E and Kurths J (2011). Synthetic multicellular oscillatory systems: controlling protein dynamics with genetic circuits. Physica Scripta 84, 045007.

Hempel S, Koseska A, Kurths J, Nikoloski Z (2011).Inner composition alignment for inferring directed networks from short time series. Phys Rev Lett 107, 054101. doi http://dx.doi.org/10.1103/PhysRevLett.107.054101.

Hempel S, Koseska A, Nikoloski Z, Kurths J (2011). Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 12, 292. doi: 10.1186/1471-2105-12-292.

Grimbs S, Arnold A, Koseska A, Kurths J, Selbig J, Nikoloski Z (2011).Spatiotemporal dynamics of the Calvin cycle: multistationarity and symmetry breaking instabilities. Biosystems 103(2):212-23.
doi: 10.1016/j.biosystems.2010.10.015.

2010

Koseska A, Kurths J (2010). Topological structures enhance the presence of dynamical regimes in synthetic networks. Chaos 20, 045111.

Koseska A, Volkov E, Kurths J (2010). Parameter mismatches and oscillation death in coupled oscillators. Chaos 20(2):023132. doi: 10.1063/1.3456937.

Koseska A, Ullner E, Volkov E, Kurths J, García-Ojalvo J (2010). Cooperative differentiation through clustering in multicellular populations. J Theor Biol 263, 189-202. doi: 10.1016/j.jtbi.2009.11.007.

Zakharova A, Vadivasova T, Anishchenko V, Koseska A, Kurths J (2010). Stochastic bifurcations and coherencelike resonance in a self-sustained bistable noisy oscillator. Phys Rev E Stat Nonlin Soft Matter Phys 81, 011106.

2009

Koseska A, Volkov E and Kurths J (2009). Detuning-dependent dominance of oscillation death in globally coupled synthetic genetic oscillators.Europhys Lett 85, 28002. doi: 10.1209/0295-5075/85/28002

Koseska A, Zaikin A, Kurths J, García-Ojalvo J (2009). Timing cellular decision making under noise via cell-cell communication. PLoS One 4, e4872. doi: 10.1371/journal.pone.0004872.

2008

Ullner E, Koseska A, Kurths J, Volkov E, Kantz H, García-Ojalvo J (2008). Multistability of synthetic genetic networks with repressive cell-to-cell communication. Phys Rev E Stat Nonlin Soft Matter Phys 78, 031904. http://dx.doi.org/10.1103/PhysRevE.78.031904

2007

Koseska A, E. Volkov, Zaikin A and Kurths J (2007).Quantized cycling time in artificial gene networks induced by noise and intercell communication. Phys.Rev.E 76, 020901(R). https://doi.org/10.1103/PhysRevE.76.020901

Koseska A, Volkov E, Zaikin A, Kurths J (2007). Inherent multistability in arrays of autoinducer coupled genetic oscillators. Phys Rev E Stat Nonlin Soft Matter Phys 3, 031916. http://dx.doi.org/10.1103/PhysRevE.75.031916

Koseska A, Zaikin A, Garcia-Ojalvo J and Kurths J (2007). Stochastic suppression of gene expression oscillators under intercell coupling. Phys.Rev.E 75, 031917. https://doi.org/10.1103/PhysRevE.75.031917